PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000177906
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 321aa    MW: 35670.8 Da    PI: 8.2929
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000177906genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.3e-29167226159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+
  MDP0000177906 167 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVEDQSILVGTYEGEHNHP 226
                    58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28162228IPR003657WRKY domain
PROSITE profilePS5081126.406162228IPR003657WRKY domain
SuperFamilySSF1182905.89E-25163228IPR003657WRKY domain
SMARTSM007745.4E-33167227IPR003657WRKY domain
PfamPF031066.3E-24168226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDHSAAYDDD TTLDLNSRPL RLFDDTPMIK QEVHSKISID FGRQLSSTEE SGRLLEELHR  60
VSAENKKLTE MLTVMGENYN ALRSQLLEYM SKNPEKELSP ISKKRKSESS NNNTNSNNIM  120
NGAVNGNSES SSSDGESFKK PREETIKAKV SRIYVRTEAS DTTSLVVKDG YQWRKYGQKV  180
TRDNPCPRAY FKCSFAPSCP VKKKVQRSVE DQSILVGTYE GEHNHPNPSQ IEATSGSNRC  240
MTIGSVPYST SLGSSGPTIT LDLTKSKSST ADAEGTKTRT ETPEVRKFLV EQMASSLTKD  300
PDFTKALATA ISGRILQHNT Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20151228174WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.136320.0bud| fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129120.0JX112912.1 Malus hupehensis WRKY transcription factor 40a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342807.10.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH72e-99WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLV9MHD50.0V9MHD5_9R
STRINGPOPTR_0001s03620.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.18e-93WRKY DNA-binding protein 40